Package: skiftiTools 0.1.0
Ilkka Suuronen
skiftiTools: Tools and Operations for Reading, Writing, Viewing, and Manipulating SKIFTI Files
SKIFTI files contain brain imaging data in coordinates across Tract Based Spatial Statistics (TBSS) skeleton, which represent the brain white matter intensity values. 'skiftiTools' provides a unified environment for reading, writing, visualizing and manipulating SKIFTI-format data. It supports the "subsetting", "concatenating", and using data as data.frame for R statistical functions. The SKIFTI data is structured for convenient access to the data and metadata, and includes support for visualizations. For more information see Merisaari et al. (2024) <doi:10.57736/87d2-0608>.
Authors:
skiftiTools_0.1.0.tar.gz
skiftiTools_0.1.0.zip(r-4.7-any)skiftiTools_0.1.0.zip(r-4.6-any)skiftiTools_0.1.0.zip(r-4.5-any)
skiftiTools_0.1.0.tgz(r-4.6-any)skiftiTools_0.1.0.tgz(r-4.5-any)
skiftiTools_0.1.0.tar.gz(r-4.7-any)skiftiTools_0.1.0.tar.gz(r-4.6-any)
skiftiTools_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
skiftiTools/json (API)
| # Install 'skiftiTools' in R: |
| install.packages('skiftiTools', repos = c('https://haanme.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/haanme/skiftitools/issues
Last updated from:8d178f7888. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 176 | ||
| source / vignettes | OK | 223 | ||
| linux-release | OK | 158 | ||
| macos-release | OK | 169 | ||
| macos-oldrel | OK | 185 | ||
| windows-devel | OK | 97 | ||
| windows-release | OK | 187 | ||
| windows-oldrel | OK | 105 | ||
| wasm-release | OK | 155 |
Exports:concatNifti2SkiftireadSkiftisave_skeletonSkifti2CSVSkifti2NiftisubsetwriteSkifti
Dependencies:abindbase64encBHbigmemorybigmemory.sribslibcachemcliClimProjDiagscodetoolsdigestdoParalleleasyNCDFeasyVerificationevaluatefastmapfontawesomeforeachfsgluegswhighrhtmltoolshtmlwidgetsiteratorsjquerylibjsonliteknitrlatticelifecyclemagrittrmapprojmapsMASSmemoisemimemultiApplyNbClustncdf4ocepbapplyplyrpngR.methodsS3R.ooR.utilsR6rappdirsRcppRcppArmadilloRcppEigenrglrlangrmarchingcubesrmarkdownRNiftiRvcgs2dvsasssignalSpecsVerificationstringistringrtinytexuuidvctrsxfunyamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Concatenate Skifti data | concat |
| Create a SKIFTI file from fsl TBSS skeleton data | Nifti2Skifti |
| Read Skifti data | readSkifti |
| Create png from mask and data in Nifti format | save_skeleton |
| Create a Nifti file from Skifti data | Skifti2CSV |
| Create a Nifti file from Skifti data | Skifti2Nifti |
| Get subset of Skifti data | subset |
| Write Skifti data | writeSkifti |